Index

A

ABCBoundary (class in coffee.grid.grid) ABCGrid (class in coffee.grid.grid) ABCSolver (class in coffee.solvers.solvers) ABCTimeSlice (class in coffee.tslices.tslices) above_cutoff() (coffee.actions.actions.BlowupCutoff method) abs() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) absolute() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) advance() (coffee.solvers.solvers.ABCSolver method) (coffee.solvers.solvers.Euler method) (coffee.solvers.solvers.ImplicitEuler method) (coffee.solvers.solvers.RungeKutta4 method) (coffee.solvers.solvers.RungeKutta4Dirichlet method) animate() (coffee.io.simulation_data.Sim method) any() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) apply_along_axis() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method)

apply_over_axes() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) arange() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) array() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) array_equal() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) array_value_index_mapping() (in module coffee.io.simulation_data) asarray() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) atleast_1d() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) atleast_2d() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) attrs (coffee.io.simulation_data.DataGroup property) attrs_list() (coffee.io.simulation_data.DataGroup method) axes (coffee.grid.grid.ABCGrid property) (coffee.grid.grid.GeneralGrid property) (coffee.grid.grid.UniformCart property)

B

B() (coffee.diffop.sbp.dissipation.Diss43_DDST method) Backend (class in coffee.backend.backend) BackendBase (class in coffee.backend.backend) barrier() (coffee.grid.grid.ABCGrid method) (coffee.mpi.mpiinterfaces.MPIInterface method) (coffee.tslices.tslices.ABCTimeSlice method)

BlowupCutoff (class in coffee.actions.actions) BOUNDARY_TYPE_GHOST_POINTS (in module coffee.diffop.sbp.sbp) BOUNDARY_TYPE_SAT (in module coffee.diffop.sbp.sbp)

C

coffee module coffee.actions module coffee.actions.actions module coffee.actions.hdf_output module coffee.actions.mpl_plotter module coffee.backend module coffee.backend.backend module coffee.diffop module coffee.diffop.sbp module coffee.diffop.sbp.dissipation module coffee.diffop.sbp.sbp module coffee.free_data module coffee.grid module coffee.grid.grid module

coffee.ibvp module coffee.io module coffee.io.simulation_data module coffee.mpi module coffee.mpi.mpiinterfaces module coffee.solvers module coffee.solvers.solvers module coffee.system module coffee.tslices module coffee.tslices.tslices module collect_data() (coffee.grid.grid.ABCGrid method) (coffee.mpi.mpiinterfaces.EvenCart method) (coffee.tslices.tslices.ABCTimeSlice method) communicate() (coffee.grid.grid.ABCGrid method) (coffee.mpi.mpiinterfaces.EvenCart method) (coffee.mpi.mpiinterfaces.MPIInterface method) (coffee.tslices.tslices.ABCTimeSlice method) convolve() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method)

D

D21_CNG (class in coffee.diffop.sbp.sbp) D42 (class in coffee.diffop.sbp.sbp) D43_2_CNG (class in coffee.diffop.sbp.sbp) D43_CNG (class in coffee.diffop.sbp.sbp) D43_Strand (class in coffee.diffop.sbp.sbp) D43_Tiglioetal (class in coffee.diffop.sbp.sbp) D65_min_err (class in coffee.diffop.sbp.sbp) DataGroup (class in coffee.io.simulation_data) dgTypes (in module coffee.io.simulation_data) dgTypes_DataGroups (in module coffee.io.simulation_data) diag() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method)

DIRECTION_ERROR (coffee.grid.grid.ABCBoundary attribute) dirichlet() (coffee.free_data.FreeData method) Diss (class in coffee.diffop.sbp.dissipation) Diss21_DDST (class in coffee.diffop.sbp.dissipation) Diss42_DDST (class in coffee.diffop.sbp.dissipation) Diss43_DDST (class in coffee.diffop.sbp.dissipation) DissDiag (class in coffee.diffop.sbp.dissipation) DissRestFull (class in coffee.diffop.sbp.dissipation) DomainDataGroup (class in coffee.io.simulation_data) dot() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) dtype() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method)

E

empty() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) empty_like() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) Euler (class in coffee.solvers.solvers) evaluate() (coffee.system.System method) EvenCart (class in coffee.mpi.mpiinterfaces) exact() (coffee.free_data.FreeData method)

exp() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) external_slice() (coffee.grid.grid.ABCBoundary method) (coffee.grid.grid.MPIBoundary method) external_slices() (coffee.grid.grid.ABCBoundary method) (coffee.grid.grid.ABCGrid method) (coffee.grid.grid.GeneralBoundary method) (coffee.tslices.tslices.ABCTimeSlice method)

F

FreeData (class in coffee.free_data) fromiter() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method)

full_grid (coffee.grid.grid.GeneralGrid property) (coffee.grid.grid.UniformCart property)

G

g00 (coffee.diffop.sbp.sbp.SBP attribute) GeneralBoundary (class in coffee.grid.grid) GeneralGrid (class in coffee.grid.grid) getDgType() (coffee.io.simulation_data.Sim method) (coffee.io.simulation_data.SimulationHDF method) getDgTypeAttr() (coffee.io.simulation_data.Sim method) (coffee.io.simulation_data.SimulationHDF method) getSimData() (coffee.io.simulation_data.SimulationHDF method) getSims() (coffee.io.simulation_data.SimulationHDF method) ghost_points() (coffee.diffop.sbp.sbp.SBP method) (coffee.grid.grid.ABCBoundary method) (coffee.grid.grid.GeneralBoundary method) (coffee.grid.grid.MPIBoundary method)

gNN (coffee.diffop.sbp.sbp.SBP attribute) GNUplot() (coffee.io.simulation_data.Sim method) groupname (coffee.actions.hdf_output.SimOutput.Data attribute) (coffee.actions.hdf_output.SimOutput.Domains attribute) (coffee.actions.hdf_output.SimOutput.Exact attribute) (coffee.actions.hdf_output.SimOutput.System attribute) (coffee.actions.hdf_output.SimOutput.Times attribute) (coffee.actions.hdf_output.SimOutput.TimeStep attribute)

I

IBVP (class in coffee.ibvp) ImplicitEuler (class in coffee.solvers.solvers) index_of_attr() (coffee.io.simulation_data.DataGroup method) indexOfTime() (coffee.io.simulation_data.Sim method) (coffee.io.simulation_data.SimulationHDF method) Info (class in coffee.actions.actions)

initial_data() (coffee.free_data.FreeData method) initialValues() (coffee.system.System method) internal_points() (coffee.diffop.sbp.sbp.SBP method) internal_slice() (coffee.grid.grid.ABCBoundary method) (coffee.grid.grid.MPIBoundary method) iteration (coffee.ibvp.IBVP attribute)

L

LEFT (coffee.grid.grid.ABCBoundary attribute) left() (coffee.system.System method) left_boundary() (coffee.free_data.FreeData method) lib_stride_tricks_as_strided() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method)

linspace() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) log() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) log2() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method)

M

mat() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) max() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) maxIteration (coffee.ibvp.IBVP attribute) meshes (coffee.grid.grid.ABCGrid property) min() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) module coffee coffee.actions coffee.actions.actions coffee.actions.hdf_output coffee.actions.mpl_plotter coffee.backend coffee.backend.backend coffee.diffop coffee.diffop.sbp coffee.diffop.sbp.dissipation coffee.diffop.sbp.sbp coffee.free_data coffee.grid coffee.grid.grid coffee.ibvp coffee.io coffee.io.simulation_data coffee.mpi coffee.mpi.mpiinterfaces coffee.solvers coffee.solvers.solvers coffee.system coffee.tslices coffee.tslices.tslices

MPIBoundary (class in coffee.grid.grid) MPIInterface (class in coffee.mpi.mpiinterfaces)

N

name (coffee.diffop.sbp.dissipation.Diss attribute) (coffee.diffop.sbp.dissipation.DissDiag attribute) (coffee.diffop.sbp.dissipation.DissRestFull attribute) (coffee.diffop.sbp.sbp.SBP attribute) (coffee.io.simulation_data.DataGroup property) (coffee.solvers.solvers.ABCSolver property) (coffee.solvers.solvers.Euler attribute) (coffee.solvers.solvers.ImplicitEuler attribute) (coffee.solvers.solvers.RungeKutta4 attribute)

name() (coffee.io.simulation_data.SimulationHDF method) ndarray() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) nonzero() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) NumpyBackend (class in coffee.backend.backend)

O

ones() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method)

ones_like() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method)

P

pbound (coffee.diffop.sbp.sbp.SBP attribute) penalty_boundary() (coffee.diffop.sbp.sbp.SBP method) plot() (coffee.io.simulation_data.Sim method)

Plotter (class in coffee.actions.mpl_plotter) power() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) Prototype (class in coffee.actions.actions)

R

RIGHT (coffee.grid.grid.ABCBoundary attribute) right() (coffee.system.System method) right_boundary() (coffee.free_data.FreeData method)

run() (coffee.ibvp.IBVP method) RungeKutta4 (class in coffee.solvers.solvers) RungeKutta4Dirichlet (class in coffee.solvers.solvers)

S

savetxt() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) SBP (class in coffee.diffop.sbp.sbp) set_backend() (coffee.backend.backend.Backend method) set_printoptions() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) setup() (coffee.actions.hdf_output.SimOutput.SimOutputType method) (coffee.actions.hdf_output.SimOutput.System method) Sim (class in coffee.io.simulation_data) sim() (coffee.io.simulation_data.SimulationHDF method) Sim.dsReturnValue (class in coffee.io.simulation_data) SimOutput (class in coffee.actions.hdf_output) SimOutput.Data (class in coffee.actions.hdf_output) SimOutput.DerivedData (class in coffee.actions.hdf_output) SimOutput.Domains (class in coffee.actions.hdf_output) SimOutput.Exact (class in coffee.actions.hdf_output) SimOutput.SimOutputType (class in coffee.actions.hdf_output) SimOutput.System (class in coffee.actions.hdf_output)

SimOutput.Times (class in coffee.actions.hdf_output) SimOutput.TimeStep (class in coffee.actions.hdf_output) SimpleMPIBoundary (class in coffee.grid.grid) SimulationHDF (class in coffee.io.simulation_data) SingleCartesianGridBoundary (class in coffee.grid.grid) source_and_dest() (coffee.grid.grid.MPIBoundary method) squeeze() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) step_sizes (coffee.grid.grid.ABCGrid property) (coffee.grid.grid.GeneralGrid property) (coffee.grid.grid.UniformCart property) subdomain (coffee.mpi.mpiinterfaces.EvenCart property) subdomain() (coffee.mpi.mpiinterfaces.MPIInterface method) sum() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) sysDTypes (in module coffee.io.simulation_data) System (class in coffee.system) systemD (in module coffee.io.simulation_data)

T

tan() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method) theActions (coffee.ibvp.IBVP attribute) theGrid (coffee.ibvp.IBVP attribute)

theSolver (coffee.ibvp.IBVP attribute) TimeSlice (class in coffee.tslices.tslices) timestep() (coffee.system.System method) tslice() (coffee.io.simulation_data.Sim method) (coffee.io.simulation_data.SimulationHDF method)

U

UniformCart (class in coffee.grid.grid)

union1d() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method)

V

validate_boundary_type() (in module coffee.diffop.sbp.sbp)

vectorize() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method)

W

where() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method)

will_run() (coffee.actions.actions.Prototype method) write() (coffee.io.simulation_data.Sim method) (coffee.io.simulation_data.SimulationHDF method)

Z

zeros() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method)

zeros_like() (coffee.backend.backend.Backend method) (coffee.backend.backend.NumpyBackend method)